Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CDM67520.1 | CDM68101.1 | CM240_0353 | CM240_0937 | Members of this family are transcriptional regulators that appear to be related to the PF01047 family. This family includes PadR Q9EXE6 a protein that is involved in negative regulation of phenolic acid metabolism; Family membership. | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | 0.405 |
| CDM67520.1 | CDM69864.1 | CM240_0353 | CM240_2747 | Members of this family are transcriptional regulators that appear to be related to the PF01047 family. This family includes PadR Q9EXE6 a protein that is involved in negative regulation of phenolic acid metabolism; Family membership. | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily. | 0.405 |
| CDM68101.1 | CDM67520.1 | CM240_0937 | CM240_0353 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | Members of this family are transcriptional regulators that appear to be related to the PF01047 family. This family includes PadR Q9EXE6 a protein that is involved in negative regulation of phenolic acid metabolism; Family membership. | 0.405 |
| CDM68101.1 | CDM68102.1 | CM240_0937 | CM240_0938 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | Putative membrane protein. | 0.773 |
| CDM68101.1 | CDM69074.1 | CM240_0937 | CM240_1916 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | The protein kinase domain is a structurally conserved protein domain containing the catalytic function of protein kinases.[2][3][4] Protein kinases are a group of enzymes that move a phosphate group onto proteins, in a process called phosphorylation. This functions as an on/off switch for many cellular processes, including metabolism,transcription, cell cycle progression,cytoskeletal rearrangement and cell movement, apoptosis,and differentiation; Family membership. | 0.424 |
| CDM68101.1 | CDM69864.1 | CM240_0937 | CM240_2747 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily. | 0.768 |
| CDM68101.1 | cheR | CM240_0937 | CM240_1547 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine-dependent methyltransferase -the C-terminal domain (this one) binds SAM; High confidence in function and specificity. | 0.465 |
| CDM68101.1 | rpoB | CM240_0937 | CM240_2460 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.486 |
| CDM68101.1 | rpoC | CM240_0937 | CM240_2459 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.494 |
| CDM68101.1 | yjbM | CM240_0937 | CM240_0936 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | GTP pyrophosphokinase YjbM; Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a minor role in stringent response; High confidence in function and specificity. | 0.508 |
| CDM68102.1 | CDM68101.1 | CM240_0938 | CM240_0937 | Putative membrane protein. | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | 0.773 |
| CDM68102.1 | yjbM | CM240_0938 | CM240_0936 | Putative membrane protein. | GTP pyrophosphokinase YjbM; Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a minor role in stringent response; High confidence in function and specificity. | 0.508 |
| CDM69074.1 | CDM68101.1 | CM240_1916 | CM240_0937 | The protein kinase domain is a structurally conserved protein domain containing the catalytic function of protein kinases.[2][3][4] Protein kinases are a group of enzymes that move a phosphate group onto proteins, in a process called phosphorylation. This functions as an on/off switch for many cellular processes, including metabolism,transcription, cell cycle progression,cytoskeletal rearrangement and cell movement, apoptosis,and differentiation; Family membership. | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | 0.424 |
| CDM69864.1 | CDM67520.1 | CM240_2747 | CM240_0353 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily. | Members of this family are transcriptional regulators that appear to be related to the PF01047 family. This family includes PadR Q9EXE6 a protein that is involved in negative regulation of phenolic acid metabolism; Family membership. | 0.405 |
| CDM69864.1 | CDM68101.1 | CM240_2747 | CM240_0937 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | 0.768 |
| CDM69864.1 | cheR | CM240_2747 | CM240_1547 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily. | CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine-dependent methyltransferase -the C-terminal domain (this one) binds SAM; High confidence in function and specificity. | 0.465 |
| CDM69864.1 | rpoB | CM240_2747 | CM240_2460 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.486 |
| CDM69864.1 | rpoC | CM240_2747 | CM240_2459 | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.494 |
| cheR | CDM68101.1 | CM240_1547 | CM240_0937 | CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine-dependent methyltransferase -the C-terminal domain (this one) binds SAM; High confidence in function and specificity. | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors,are required for the transcription of specific subsets of genes; Family membership. | 0.465 |
| cheR | CDM69864.1 | CM240_1547 | CM240_2747 | CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine-dependent methyltransferase -the C-terminal domain (this one) binds SAM; High confidence in function and specificity. | RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily. | 0.465 |
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